This cross references Alex Feltus and James Hsieh's work with Genes of interest from the Teams. GNOME overlaps with two teams. Otherwise, everyone found something different. Readers can see how these genes were selected by looking at the code from the teams post. All lists using data from TCGA.
|
Team |
CLASS |
ENSGeneID |
GeneSymbol |
GeneDescription |
GeneSymbolID |
Other Refs |
/somatic/results/variants/snpEff_genes.txt |
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000023902 |
PLEKHO1 |
pleckstrin homology domain containing O1 |
|||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000110852 |
CLEC2B |
C-type lectin domain family 2 member B |
√ |
||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000129824 |
RPS4Y1 |
ribosomal protein S4, Y-linked 1 |
UNC HiSeq mRNAseq gene expression.ipynb |
||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000171903 |
CYP4F11 |
cytochrome P450 family 4 subfamily F member 11 |
√ |
||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000198074 |
AKR1B10 |
aldo-keto reductase family 1 member B10 |
Esmo2015.pdf - AKR1B10, a new prognostic indicator in nasopharyngeal carcinoma |
√ |
|
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000241839 |
PLEKHO2 |
pleckstrin homology domain containing O2 |
|||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000230535 |
BASP1P1 |
pseudogene |
√ |
||
|
Aizheng |
KINC-KIRP_EDGE |
ENSG00000262619 |
LINC00621 |
long intergenic non-protein coding RNA 621 |
https://www.genecards.org/cgi-bin/carddisp.pl?gene=LINC00621 |
√ |
|
|
HSIEH |
HSIEH |
ENSG00000147889 |
CDKN2A |
cyclin dependent kinase inhibitor 2A [Source:HGNC Symbol;Acc:HGNC:1787] |
|||
|
HSIEH |
HSIEH |
ENSG00000107984 |
DKK1 |
dickkopf WNT signaling pathway inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:2891] |
|||
|
HSIEH |
HSIEH |
ENSG00000104332 |
SFRP1 |
secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776] |
|||
|
HSIEH |
HSIEH |
ENSG00000134086 |
VHL |
von Hippel-Lindau tumor suppressor [Source:HGNC Symbol;Acc:HGNC:12687] |
|||
|
HSIEH |
HSIEH |
ENSG00000163939 |
PBRM1 |
polybromo 1 [Source:HGNC Symbol;Acc:HGNC:30064] |
|||
|
HSIEH |
HSIEH |
ENSG00000181555 |
SETD2 |
SET domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18420] |
|||
|
HSIEH |
HSIEH |
ENSG00000126012 |
KDM5C |
lysine demethylase 5C [Source:HGNC Symbol;Acc:HGNC:11114] |
|||
|
HSIEH |
HSIEH |
ENSG00000163930 |
BAP1 |
BRCA1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:950] |
|||
|
HSIEH |
HSIEH |
ENSG00000284792 |
PTEN |
phosphatase and tensin homolog [Source:HGNC Symbol;Acc:HGNC:9588] |
|||
|
HSIEH |
HSIEH |
ENSG00000198793 |
MTOR |
mechanistic target of rapamycin kinase [Source:HGNC Symbol;Acc:HGNC:3942] |
|||
|
HSIEH |
HSIEH |
ENSG00000141510 |
TP53 |
tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998] |
|||
|
HSIEH |
HSIEH |
ENSG00000121879 |
PIK3CA |
phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:8975] |
|||
|
HSIEH |
HSIEH |
ENSG00000105976 |
MET |
MET proto-oncogene, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7029] |
|||
|
HSIEH |
HSIEH |
ENSG00000083857 |
FAT1 |
FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595] |
|||
|
HSIEH |
HSIEH |
ENSG00000186575 |
NF2 |
neurofibromin 2 [Source:HGNC Symbol;Acc:HGNC:7773] |
|||
|
HSIEH |
HSIEH |
ENSG00000147050 |
KDM6A |
lysine demethylase 6A [Source:HGNC Symbol;Acc:HGNC:12637] |
|||
|
HSIEH |
HSIEH |
ENSG00000099956 |
SMARCB1 |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:HGNC Symbol;Acc:HGNC:11103] |
|||
|
HSIEH |
HSIEH |
ENSG00000116044 |
NFE2L2 |
nuclear factor, erythroid 2 like 2 [Source:HGNC Symbol;Acc:HGNC:7782] |
|||
|
HSIEH |
HSIEH |
ENSG00000101972 |
STAG2 |
stromal antigen 2 [Source:HGNC Symbol;Acc:HGNC:11355] |
|||
|
DeeperDrugs |
TTRAP |
** |
|||||
|
DeeperDrugs |
CDK9 |
||||||
|
DeeperDrugs |
BARD1 |
See GNOME |
|||||
|
DeeperDrugs |
APOB |
||||||
|
BioMarkers.ai |
FHL1 |
benzopyrine exposure biomarker |
|||||
|
BioMarkers.ai |
KNG1 |
Widest Discrimination Gap, ssential for blood coagulation |
|||||
|
BioMarkers.ai |
UMOD |
Early Diagnosis Urine-based Biomarker |
|||||
|
codeomics |
ABL1 |
||||||
|
codeomics |
PIK3CA |
||||||
|
codeomics |
mTOR |
||||||
|
ExpressForce |
** |
||||||
|
GNOME |
BARD1 |
See DeeperDrugs |
|||||
|
GNOME |
AHNAK |
||||||
|
GNOME |
RBMX |
||||||
|
GNOME |
ANAPC1 |
||||||
|
GNOME |
STARD13 |
||||||
|
GNOME |
DNAJ27 |
||||||
|
GNOME |
SCYL1 |
||||||
|
GNOME |
PDE4DIP |
See HelloKidney2 |
|||||
|
GNOME |
BCLAF1 |
||||||
|
GNOME |
PABPC1 |
||||||
|
HelloKidney |
TNFSF4 |
||||||
|
HelloKidney |
ITGAM |
||||||
|
HelloKidney2 |
PSPN |
False Positive |
|||||
|
HelloKidney2 |
FOLH1 |
||||||
|
HelloKidney2 |
TAS2R19 |
||||||
|
HelloKidney2 |
PDE4DIP |
See GNOME |
|||||
|
HelloKidney2 |
PFKP |
||||||
|
HIF1AIsNotAnOncogene |
HER2 |
||||||
|
HIF1AIsNotAnOncogene |
CDK4 |
||||||
|
HIF1AIsNotAnOncogene |
E2F2 |
||||||
|
HIF1AIsNotAnOncogene |
FGFR1 |
||||||
|
HIF1AIsNotAnOncogene |
MAPK8 |
||||||
|
HIF1AIsNotAnOncogene |
MSH2 |
||||||
|
HIF1AIsNotAnOncogene |
PARP1 |
||||||
|
HIF1AIsNotAnOncogene |
STAT5B |
||||||
|
KidneyBean |
TUBB8 |
||||||
|
studentec |
ENSG00000116337 |
AMPD2 |
|||||
|
studentec |
ENSG00000117069 |
ST6GALNAC5 |
|||||
|
studentec |
ENSG00000130226 |
DPP6 |
|||||
|
studentec |
ENSG00000143520 |
FLG2 |
|||||
|
studentec |
FTMT |
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